ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data

Mining the regulatory code of yeast by concurrent enrichment analysis of Chip-on-chip data

A Review of Optical Routers in Photonic Networks-on-Chip: A Literature Survey

Due to the increasing growth of processing cores in complex computational systems, all the connection converted bottleneck for all systems. With the protection of progressing and constructing complex photonic connection on chip, optical data transmission is the best choice for replacing with electrical interconnection for the reason of gathering connection with a high bandwidth and insertion lo...

Reliability and Performance Evaluation of Fault-aware Routing Methods for Network-on-Chip Architectures (RESEARCH NOTE)

Nowadays, faults and failures are increasing especially in complex systems such as Network-on-Chip (NoC) based Systems-on-a-Chip due to the increasing susceptibility and decreasing feature sizes. On the other hand, fault-tolerant routing algorithms have an evident effect on tolerating permanent faults and improving the reliability of a Network-on-Chip based system. This paper presents reliabili...

A Routing-Aware Simulated Annealing-based Placement Method in Wireless Network on Chips

Wireless network on chip (WiNoC) is one of the promising on-chip interconnection networks for on-chip system architectures. In addition to wired links, these architectures also use wireless links. Using these wireless links makes packets reach destination nodes faster and with less power consumption. These wireless links are provided by wireless interfaces in wireless routers. The WiNoC archite...

P-value-based regulatory motif discovery using positional weight matrices.

To analyze gene regulatory networks, the sequence-dependent DNA/RNA binding affinities of proteins and noncoding RNAs are crucial. Often, these are deduced from sets of sequences enriched in factor binding sites. Two classes of computational approaches exist. The first describe binding motifs by sequence patterns and search the patterns with highest statistical significance for enrichment. The ...